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 Research Detail:


  Bioinformatics and Computational Biology:
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Dr. Md. Saidur Rahman
Dr. Masud Hasan
Dr. M. Sohel Rahman
Md. Mostofa Ali Patwary
Dr. S. M. Farhad
Dr. Md. Shohrab Hossain
Dr. Muhammad Abdullah Adnan
Dr. Md. Shamsuzzoha Bayzid
Rezwana Reaz Rimpi
Dr. Atif Hasan Rahman
Johra Muhammad Moosa

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  Recent Publications:

36. Marjan Ferdousi, Suraiya Tairin, Sttayajit Podder, A. B. M. Alim Al Islam, and Mahmuda Naznin, Finding Hierarchical Network Model in Insulin Production Process. In Proceedings of 8th IEEE Workshop of Multicore and Multithreaded Algorithms and Applications (M2A2), (accepted), IEEE, Bangkok, Thailand, pages 8, 2017
35. Johra Muhammad Moosa, Rameen Shakur, M. Kaykobad, and M. Sohel Rahman, Gene selection for cancer classification with the help of bees. BMC Medical Genomics, BioMed Central, 9(S2), 2016
34. Dipan Shaw, A. S. Islam, Shuvasish Karmaker, and M. Sohel Rahman, Approximation Algorithms for Three Dimensional Protein Folding. In Proceedings of WALCOM, Springer, Nepal, pages 274-285, 2016
33. Md. Iqbal Hossain, and Md. Saidur Rahman, A necessary condition and a sufficient condition for pairwise compatibility graphs. In Proceedings of WALCOM 2016, Springer, Lecture Notes in Computer Science, 9627, pages 107-113, 2016
32. F. T. Zohora, and M. Sohel Rahman, "An efficient algorithm to detect common ancestor genes for non-overlapping inversion and applications.". Theoretical Computer Science, 2016
31. Mohammad Saifur Rahman, Ali Alatabbi, Tanver Athar, Maxime Crochemore, and M. Sohel Rahman, Absent words and the (dis)similarity analysis of DNA sequences: An Experimental Study. BMC Research Notes, BioMed Central, 9(186), :1-8, 2016
30. F. T. Zohora, and M. Sohel Rahman, Application of Consensus String Matching in the Diagnosis of Allelic Heterogeneity Involving Transposition Mutation. International Journal of Data Mining and Bioinformatics, Inderscience, 2015
29. Sumaiya Iqbal, M. Kaykobad, and M. Sohel Rahman, Solving the multi-objective Vehicle Routing Problem with Soft Time Windows with the help of bees. Swarm and Evolutionary Computation, Elsevier, 24(-), :50-64, 2015
28. Sumaiya Iqbal, Avdesh Mishra, and Md Tamjidul Hoque, Improved prediction of accessible surface area results in efficient energy function application. Journal of Theoretical Biology, Elsevier Ltd., 380:380 - 391, 2015
27. Rezaul Karim, Mohd. Momin Al Aziz, Swakkhar Shatabda, M. Sohel Rahman, Md. Abul Kashem Mia, and Farhana Zaman, CoMOGrad and PHOG: From Computer Vision to Fast and Accurate Protein Tertiary Structure Retrieval. Scientific Reports, Nature Publishing Group, 5(-), :13275, 2015
26. Ahammed Ullah, Nasif Ahmed, Subrata Dey Pappu, Swakkhar Shatabda, A. Z. M. Dayem Ullah, and M. Sohel Rahman, Efficient conformational space exploration in ab initio protein folding simulation. Royal Society Open Science, Royal Society, 2:150238, 2015
25. Kishwar Shafin, Kazi Lutful Kabir, Iffatur Ridwan, Tasmiah Tamzid Anannya, Rashid Saadman Karim, Mohammad Mozammel Hoque, and M. Sohel Rahman, Impact of Heuristics in Clustering Large Biological Networks. Computational Biology and Chemistry, Elsevier, 59:28-36, 2015
24. Md. Khaledur Rahman, and M. Sohel Rahman, Prefix and suffix transreversals on binary and ternary strings. Journal of Discrete Algorithms, Elsevier, 33:160-170, 2015
23. S.M.N. Arifin, R.R Arifin, D.A. Pitts, M. Sohel Rahman, Sara Nowreen, G.R. Madey, and F.H. Collins, Landscape Epidemiology Modeling Using an Agent-Based Model and a Geographic Information System. Land, MDPI AG, Switzerland, 4(2), :378-412, 2015
22. Effat Farhana, and M. Sohel Rahman, Constrained sequence analysis algorithms in computational biology. Information Sciences, Elsevier, 295:247-257, 2015
21. Sumaiya Iqbal, Md Nasrul Islam, and Md Tamjidul Hoque, Improved protein disorder predictor by smoothing output. In Proceedings of 17th International Conference on Computer and Information Technology (ICCIT),, IEEE, Dhaka, Bangladesh, pages 110 - 115, 2014
20. F. T. Zohora, and M. Sohel Rahman, Application of Consensus String Matching in the Diagnosis of Allelic Heterogeneity. In Proceedings of International Symposium on Bioinformatics Research and Applications (ISBRA 2014), Springer, Zhangjiajie, China, 2014
19. Dipan Shaw, A. S. Islam, M. Sohel Rahman, and Masud Hasan, Protein folding in HP model on hexagonal lattices with diagonals. BMC Bioinformatics, BMC, 15(S-2), :S7, 2014
18. A. H. Rahman, and Lior Pachter, CGAL: computing genome assembly likelihoods. Genome Biology, 14(R8), 2013
17. Sammi Abida Salma, Md. Saidur Rahman, and Md. Iqbal Hossain, Triangle-Free Outerplanar 3-Graphs are Pairwise Compatibility Graphs. Journal of Graph Algorithms and Applications (JGAA), 17(2), :81-102, 2013
16. S.M. Ferdous, and M. Sohel Rahman, Solving the Minimum Common String Partition Problem with the Help of Ants. In Proceedings of International Conference on Swarm Intelligence (LNCS 7929), Springer, China, pages 306-313, 2013
15. Amit Kumar Dutta, Masud Hasan, and M. Sohel Rahman, Prefix transpositions on binary and ternary strings. Information Processing Letters, 113(8), :265-270, 2013
14. S. Mehnaz, and M. Sohel Rahman, Pairwise Compatibility Graphs Revisited. In Proceedings of ICIEV, Dhaka, Bangladesh, 2013
13. M.T.I Aumi, M.T. Moosa, and M. Sohel Rahman, Pattern Matching in Indeterminate and Arc-Annotated Sequences. Recent Patents on DNA and Gene Sequences, Bentham Science, 7(2), :96-104, 2013
12. S. K. K. Santu, S. Rahman, Saikat Chakraborty , and M. Sohel Rahman, PIssGA: An ultra fast meta-heuristic approach to solve protein inference problem. In Proceedings of 16th International Conference on Computer and Information Technology (ICCIT), 2013
11. Deen Mohammad Abdullah, Wali Md Abdullah, and M. Sohel Rahman, Improving the Performance of a Genome Sorting Algorithm with Inverted Block-Interchange. Journal of Computers, 8(5), :1119-1126, 2013
10. J. S. Firoz, M. Sohel Rahman, and T. K. Saha, Bee Algorithms for Solving DNA Fragment Assembly Problem with Noisy and Noiseless data. In Proceedings of GECCO, 2012
9. Muhammad Rashed Alam, and M. Sohel Rahman, The substring inclusion constraint longest common subsequence problem can be solved in quadratic time. Journal of Discrete Algorithms, Elsevier, 17:67-73, 2012
8. Mahfuza Sharmin, M. Afrin, and M. Sohel Rahman, Local Search Techniques for Placing Unique Restriction Sites in Synthetic Genomes. In Proceedings of 4th International Conference on Bioinformatics and Computational Biology (BiCOB), pages 13-18, 2012
7. E. Farhana, and M. Sohel Rahman, Efficient Algorithm for Restricted LCS Problem. In Proceedings of 4th International Conference on Bioinformatics and Computational Biology (BiCOB), pages 51-56, 2012
6. J.S. Firoz, Masud Hasan, A. Z. Khan, and M. Sohel Rahman, The 1.375 Approximation Algorithm for Sorting by Transpositions Can Run in $O(nlog n)$ Time. Journal of Computational Biology, Mary Ann Liebert, Inc. publishers, USA, 18(8), :1007-1011, 2011
5. Mahfuza Sharmin, R. Yeasmin, Masud Hasan, A. Rahman, and M. Sohel Rahman, Pancake Flipping with Two Spatulas. In Proceedings of ISCO 2010 Proceedings: Electronic Notes in Discrete Mathematics, pages 231-238, 2010
4. J. S. Firoz, Masud Hasan, A. Z. Khan, and M. Sohel Rahman, The 1.375 Approximation Algorithm for Sorting by Transpositions Can Run in O(nlogn) Time (Conference. In Proceedings of WALCOM, 2010
3. Muhammad Abdullah Adnan, and Md. Saidur Rahman, Efficient generation of evolutionary trees. INFOCOMP Journal of Computer Science,, 6(1):30-36, 2007
2. R. Paul, M.S. Nasif , and S. M. Farhad, Fingerprint Recognition by Chain Coded String Matching Technique. In Proceedings of Information and Communication Technology (ICICT07), Dhaka, Bangladesh, 2007
1. A. S. Islam, and M. Sohel Rahman, On the protein folding problem in 2D-triangular lattices. Algorithms for Molecular Biology, BMC, 8(30),

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