Dr. Atif Hasan Rahman (আতিফ হাসান রহমান) Associate Professor Contact: Department of Computer Science and Engineering
Bangladesh University of Engineering and Technology
Dhaka-1000, Bangladesh Telephone:Office: Cell: Residence: Email: atif AT cse DOT buet DOT ac DOT bd Homepage: Research Area:Bioinformatics and Computational Biology
Research Interest: Genomics Academic Background: Ph.D. in Computer Science, 2015
University of California, Berkeley
B.Sc.Engg. in Computer Science and Engineering, 2007
Bangladesh University of Engineering and Technology
Selected Publications: Tasfia Zahin, Md. Hasin Abrar, Mizanur Rahman, Tahrina Tasnim, Md. Shamsuzzoha Bayzid and Atif Rahman, An Alignment-free Method for Phylogeny Estimation using Maximum Likelihood. bioRxiv (2019): 875526.
Mahmudur Rahman Hera, Amatur Rahman and Atif Rahman, kRISP-meR: A Reference-free Guide-RNA Design Tool for CRISPR/Cas9. bioRxiv (2019): 869115.
Atif Rahman and Lior Pachter, SWALO: scaffolding with assembly likelihood optimization. bioRxiv (2016): 081786.
Atif Rahman, Ingilief Hallgrimsdottir, Michael B. Eisen and Lior Pachter, Association mapping from sequencing reads using k-mers. eLife 7 (2018): e32920.
Atif Rahman and Lior Pachter, CGAL: computing genome assembly likelihoods, Genome Biology, 14 (2013), R8.
Atif Rahman, Swakkhar Shatabda, and Masud Hasan. An approximation algorithm for sorting by reversals and transpositions. Journal of Discrete Algorithms, 6(3):449–457, Elsevier, 2008.
Journal Papers:
3. Atif Hasan Rahman, Ingilief Hallgrimsdottir, Michael Eisen, and Lior Pachter, Association mapping from sequencing reads using k-mers. eLife, 7(e32920), 2018 |
2. Atif Hasan Rahman, and Lior Pachter, CGAL: computing genome assembly likelihoods. Genome Biology, 14(R8), 2013 |
1. Atif Hasan Rahman, Swakkhar Shatabda, and Masud Hasan, An approximation algorithm for sorting by reversals and transpositions. Journal of Discrete Algorithms, Elsevier, 6(3), :449-457, 2008 |
Conference Papers:
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