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Contact:
Department of Computer Science and Engineering
Bangladesh University of Engineering and Technology
Dhaka-1000, Bangladesh

Email:
atif AT cse DOT buet DOT ac DOT bd

Telephone:
Office:
Cell:
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Web page:

Dr. Atif Hasan Rahman (আতিফ হাসান রহমান)

Assistant Professor
Research Area:
Bioinformatics and Computational Biology

Research Interest:
Genomics
Academic Background:
Ph.D. in Computer Science, 2015
University of California, Berkeley

B.Sc.Engg. in Computer Science and Engineering, 2007
Bangladesh University of Engineering and Technology

Selected Publications:

Tasfia Zahin, Md. Hasin Abrar, Mizanur Rahman, Tahrina Tasnim, Md. Shamsuzzoha Bayzid and Atif Rahman, An Alignment-free Method for Phylogeny Estimation using Maximum Likelihood. bioRxiv (2019): 875526.

Mahmudur Rahman Hera, Amatur Rahman and Atif Rahman, kRISP-meR: A Reference-free Guide-RNA Design Tool for CRISPR/Cas9. bioRxiv (2019): 869115.

Atif Rahman and Lior Pachter, SWALO: scaffolding with assembly likelihood optimization. bioRxiv (2016): 081786.

Atif Rahman, Ingilief Hallgrimsdottir, Michael B. Eisen and Lior Pachter, Association mapping from sequencing reads using k-mers. eLife 7 (2018): e32920.

Atif Rahman and Lior Pachter, CGAL: computing genome assembly likelihoods, Genome Biology, 14 (2013), R8.

Atif Rahman, Swakkhar Shatabda, and Masud Hasan. An approximation algorithm for sorting by reversals and transpositions. Journal of Discrete Algorithms, 6(3):449–457, Elsevier, 2008.

Journal Papers:

1. Mehrab Zakaria and Mobin Jaiaid and Tahmid Ibrahim Asadullah and Rahman Atif, Efficient association mapping from k-mers—An application in finding sex-specific sequences, Plos one, 16, e0245058, 2021.
2. Mehrab Zakaria and Mobin Jaiaid and Tahmid Ibrahim Asadullah and Pachter Lior and Rahman Atif, Reference-free Association Mapping from Sequencing Reads Using k-mers, Bio-protocol, 10, e3815--e3815, 2020.
3. Nayeem Muhammad Ali and Bayzid Md Shamsuzzoha and Rahman Atif Hasan and Shahriyar Rifat and Rahman M Sohel, Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference, IEEE Transactions on Cybernetics, , , 2020.
4. A. H. Rahman, Ingilief Hallgrimsdottir, Michael Eisen, Lior Pachter, Association mapping from sequencing reads using k-mers, eLife, 7, , 2018.
5. A. H. Rahman, Lior Pachter, CGAL: computing genome assembly likelihoods, Genome Biology, 14, , 2013.
6. A. H. Rahman, Swakkhar Shatabda, Masud Hasan, An approximation algorithm for sorting by reversals and transpositions, Journal of Discrete Algorithms, 6, 449-457, 2008.
Conference Papers: