faculty image


Contact:
Department of Computer Science and Engineering
Bangladesh University of Engineering and Technology
Dhaka 1000, Bangladesh

Email:
shams.bayzid@gmail.com, shams_bayzid@cse.buet.ac.bd

Telephone:
Office: 88029665650/7109
Cell: 880 1937881293
Residence:

Web page:
https://shamsbayzid.github.io/

Dr. Md. Shamsuzzoha Bayzid (ডঃ মোঃ সামসুজ্জোহা বায়েজীদ)

Assistant Professor
Research Area:
Bioinformatics and Computational Biology

Research Interest:
Bioinformatics
Algorithms
Graph Theory
Machine Learning
Predictive Modeling Techniques
Academic Background:
PhD in Computer Science, 2016
University of Texas at Austin

M.Sc. in Computer Science and Engineering, 2010
Bangladesh University of Engineering and Technology

B.Sc. in Computer Science and Engineering, 2008
Bangladesh University of Engineering and Technology
Selected Publications:

22. Muhammad Ali Nayeem, Md. Shamsuzzoha Bayzid, Atif Hasan Rahman, Rifat Shahriyar, and M. Sohel Rahman, A ‘Phylogeny-aware’ Multi-objective Optimization Approach for Computing MSA, The Genetic and Evolutionary Computation Conference (GECCO), 2019.

21. Md Shamsuzzoha Bayzid and Tandy Warnow, Gene Tree Parsimony for Incomplete Gene Trees: addressing true biological loss, Algorithms for Molecular Biology, 13:1, 2018.

20. Md Shamsuzzoha Bayzid and Tandy Warnow, Gene Tree Parsimony for Incomplete Gene Trees, Workshop on Algorithms in Bioinformatics (WABI), Lecture Notes in Computer Science, 2017.

19. Siavash Mirarab, Md. Shamsuzzoha Bayzid, Bastien Boussau and Tandy Warnow, Response to Comment on “Statistical binning enables an accurate coalescent-based estimation of the avian tree”, Science, October 9, 2015, Vol. 350 no. 6257 p. 171, doi: 10.1126/science.aaa7719.

18. Md. Shamsuzzoha Bayzid, Siavash Mirarab, Bastien Boussau and Tandy Warnow, Weighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses, PLoS ONE 10(6): e0129183. doi:10.1371/ journal.pone.0129183, 2015.

17. Siavash Mirarab, Md. Shamsuzzoha Bayzid, Bastien Boussau and Tandy Warnow, Statistical binning enables an accurate coalescent-based estimation of the avian tree, Science, December 12, 2014, vol. 346 (6215 ), doi:10.1126/science.1250463.

16. E. D. Jarvis, S. Mirarab, A. J. Aberer, B. Li, P. Houde, C. Li, S. Y. W. Ho, B. C. Faircloth, B. Nabholz, J. T. Howard, A. Suh, C. C. Weber, R. R. da Fonseca, J. Li, F. Zhang, H. Li, L. Zhou, N. Narula, L. Liu, G. Ganapathy, B. Boussau, Md. S. Bayzid, V. Zavidovych, S. Subramanian, T. Gabaldon, S. Capella-Gutierrez, J. Huerta-Cepas, B. Rekepalli, K. Munch, M. Schierup, B. Lindow, W. C. Warren, D. Ray, R. E. Green, M. W. Bruford, X. Zhan, A. Dixon, S. Li, N. Li, Y. Huang, E. P. Derryberry, M. F. Bertelsen, F. H. Sheldon, R. T. Brumfield, C. V. Mello, P. V. Lovell, M. Wirthlin, M. P. C. Schneider, F. Prosdocimi, J. A. Samaniego, A. M. V. Velazquez, A. Alfaro-Nunez, P. F. Campos, B. Petersen, T. Sicheritz-Ponten, A. Pas, T. Bailey, P. Scofield, M. Bunce, D. M. Lambert, Q. Zhou, P. Perelman, A. C. Driskell, B. Shapiro, Z. Xiong, Y. Zeng, S. Liu, Z. Li, B. Liu, K. Wu, J. Xiao, X. Yinqi, Q. Zheng, Y. Zhang, H. Yang, J. Wang, L. Smeds, F. E. Rheindt, M. Braun, J. Fjeldsa, L. Orlando, F. K. Barker, K. A. Jonsson, W. Johnson, K.-P. Koepfli, S. O'Brien, D. Haussler, O. A. Ryder, C. Rahbek, E. Willerslev, G. R. Graves, T. C. Glenn, J. McCormack, D. Burt, H. Ellegren, P. Alstrom, S. V. Edwards, A. Stamatakis, D. P. Mindell, J. Cracraft, E. L. Braun, T. Warnow, W. Jun, M. T. P. Gilbert, and G. Zhang, Whole-genome analyses resolve early branches in the tree of life of modern birds, Science, December 12, 2014, vol. 346 (6215 ), pp. 1320-1331, doi:10.1126/science.1253451.

15. Md Shamsuzzoha Bayzid, Tyler Hunt and Tandy Warnow, Disk Covering Methods Improve Phylogenomic Analyses, BMC Genomics (accepted papers from RECOMB Comparative Genomics), 15(Suppl 6):S7, doi:10.1186/1471-2164-15-S6-S7, 2014.

14. S. Mirarab, R. Reaz, M. S. Bayzid, T. Zimmermann, S. Swenson and T. Warnow, ASTRAL: Genome-scale coalescent-based species tree estimation, Bioinformatics, 30 (17): i541--i548., doi: 10.1093/bioinformatics/btu462, 2014.

13. Rezwana Reaz, Md. Shamsuzzoha Bayzid, and M. Sohel Rahman, Accurate Phylogenetic Tree Reconstruction from Quartets: A Heuristic Approach, PLoS ONE, 9 (8): e104008, doi:10.1371/journal.pone.0104008, 2014.

12. Siavash Mirarab, Md. Shamsuzzoha Bayzid, and Tandy Warnow, Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting, Systematic Biology, doi: 10.1093/sysbio/syu063, 2014.

11. Md Shamsuzzoha Bayzid, Tyler Hunt and Tandy Warnow, Disk Covering Methods Improve Phylogenomic Analyses, RECOMB Comparative Genomics, 2014.

10. Md. Shamsuzzoha Bayzid, Siavash Mirarab and Tandy Warnow, Inferring Optimal Species Trees under Gene Duplication and Loss, Pacific Symposium on Biocomputing (PSB), 18:250-261, Hawaii, January 3 - 7, 2013.

9. Md. Shamsuzzoha Bayzid and Tandy Warnow, Naive Binning Improves Phylogenomic Analyses, Bioinformatics, doi: 10.1093/bioinformatics/btt394, 2013.

8. Md. Shamsuzzoha Bayzid, Md. Maksudul Alam, Abdullah Mueen and Md. Saidur Rahman, HMEC: A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction, ISRN Bioinformatics, Vol. 2013, Article ID 291741, doi:10.1155/2013/291741, 2013.

7. Md. Shamsuzzoha Bayzid and Tandy Warnow, Estimating Optimal Species Trees from Incomplete Gene Trees under Deep Coalescence, Journal of Computational Biology, Vol. 19(6), pp. 591-605, 2012.

6. Md. Shamsuzzoha Bayzid, Md. Maksudul Alam and Md. Saidur Rahman, A Heuristic Algorithm for Minimum Conflict Individual Haplotyping, Proc. of International Conference on Biomedical Engineering and Informatics (BMEI), IEEE Computer Society Press,Vol. 5, pp. 2145--2149, 2010.

5. Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid and Md. Saidur Rahman, Discovering Pairwise Compatibility Graphs, Discrete Mathematics, Algorithms and Applications, Vol. 2(4), pp. 607-623, 2010.

4. Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid and Md. Saidur Rahman, Discovering Pairwise Compatibility Graphs, COCOON 2010, pp. 399-408, 2010.

3. Muhammad Nur Yanhaona, Md. Shamsuzzoha Bayzid and Md. Saidur Rahman, Not All Graphs are Pairwise Compatibility Graphs, Proc. of 3rd Annual Meeting of the Asian Association for Algorithms and Computation, 2010.

2. Abdullah Al Mueen, Md. Shamsuzzoha Bayzid, Md. Maksudul Alam and Md. Saidur Rahman, "A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction", Proc. of International Conference on BioMedical Engineering and Informatics 2008 (BMEI 2008), IEEE Computer Society, pp. 792-796, 2008.

1. Md. Shamsuzzoha Bayzid, Anindya Iqbal, Chowdhury Sayeed Hyder and Mohammad Tanvir Irfan, Application of Artificial Neural Network in Social Computing in the context of Third World Countries, Proc. of International Conference on Electrical and Computer Engineering (ICECE), pp. 648-653, 2008
Journal Papers:

Conference Papers: