Dr. Atif Hasan Rahman
Dr. Atif Hasan Rahman
ডঃ আতিফ হাসান রহমান
Associate Professor
  • atif AT cse DOT buet DOT ac DOT bd
  • Department of Computer Science and Engineering
    Bangladesh University of Engineering and Technology
    Dhaka-1000, Bangladesh
Biography

Atif Hasan Rahman is an Associate Professor in the Department of Computer Science and Engineering (CSE) at the Bangladesh University of Engineering & Technology (BUET). He completed his PhD from the University of California, Berkeley in 2015 under the supervision of Lior Pachter. His research area is bioinformatics and computational biology and is currently focusing on statistical methods for genome assembly and analysis. He was a recipient of Fulbright Science and Technology Fellowship in 2009.

Education
Ph.D. in Computer Science, 2015
University of California, Berkeley

B.Sc.Engg. in Computer Science and Engineering, 2007
Bangladesh University of Engineering and Technology
Research Interest
Genomics
Publications
1. Mursalin Habib, Kowshic Roy, Saem Hasan, Atif Hasan, Md Shamsuzzoha Bayzid, Terraces in species tree inference from gene trees, BMC Ecology and Evolution, 24, 135, 2024. Journal DOI
2. Islam Rubyeat and Rahman Atif, An Alignment-Free Method for Detection of Missing Regions for Phylogenetic Analysis, Heliyon, 10, E32227, 2024. Journal
3. Roy Nilanjan, Kabir Acramul Haque, Zahan Nourin, Mouna Shahba Tasmiya, Chakravarty Sakshar, Rahman Atif Hasan, Md Shamsuzzoha Bayzid, Genome wide association studies on seven yield-related traits of 183 rice varieties in Bangladesh, Plant Direct, 8, e593, 2024. Journal
4. Saha Shoumik and Afroz Sadia and Rahman Atif Hasan, MAlign: Explainable static raw-byte based malware family classification using sequence alignment, Computers \& Security, 139, 103714, 2024. Journal
5. Yafi Mashrur Ahmed and Hisham Md Hasibul Husain and Grisanti Francisco and Martin James F and Rahman Atif and Samee Md Abul Hassan, scGIST: gene panel design for spatial transcriptomics with prioritized gene sets, Genome Biology, 25, 57, 2024. Journal
6. Tarafder Sumit and Islam Mazharul and Shatabda Swakkhar and Rahman Atif, Figbird: a probabilistic method for filling gaps in genome assemblies, Bioinformatics, 38, 3717--3724, 2022. Journal
7. Das Sarkar Snigdha Sarathi and Shanto Subangkar Karmaker and Rahman Masum and Islam Md Saiful and Rahman Atif Hasan and Masud Mohammad M and Ali Mohammed Eunus, BayesBeat: Reliable Atrial Fibrillation Detection from Noisy Photoplethysmography Data, Proceedings of the ACM on Interactive Mobile Wearable and Ubiquitous Technologies, 6, 1--21, 2022. Journal
8. Ishrat Tanzila Farah, Muktadirul Islam, Kazi Tasnim Zinat, Atif Hasan Rahman, Shamsuzzoha Bayzid, Species tree estimation from gene trees by minimizing deep coalescence and maximizing quartet consistency: a comparative study and the presence of pseudo species tree terraces, Systematic Biology, 70, 1213--1231, 2021. Journal DOI
9. Rahman Atif and Pachter Lior, SWALO: scaffolding with assembly likelihood optimization, Nucleic acids research, 49, e117--e117, 2021. Journal
10. Mehrab Zakaria and Mobin Jaiaid and Tahmid Ibrahim Asadullah and Rahman Atif, Efficient association mapping from k-mers—An application in finding sex-specific sequences, Plos one, 16, e0245058, 2021. Journal
11. Nayeem Muhammad Ali and Bayzid Md Shamsuzzoha and Rahman Atif Hasan and Shahriyar Rifat and Rahman M Sohel, Multiobjective Formulation of Multiple Sequence Alignment for Phylogeny Inference, IEEE Transactions on Cybernetics, 2020. Journal
12. Mehrab Zakaria and Mobin Jaiaid and Tahmid Ibrahim Asadullah and Pachter Lior and Rahman Atif, Reference-free Association Mapping from Sequencing Reads Using k-mers, Bio-protocol, 10, e3815--e3815, 2020. Journal
13. Amam Siddiki, Masum Billah, Mohammad Alam, Kazi Shefaul Mulk Shawrob, Mahadia Kumkum, Sourav Saha, Muntaha Chowdhury, Atif H Rahman, Michael Stear, Mohammad KI Khan, Gous Miah, AK M. Mollah, Abdul Baten, Complete mitochondrial genome sequence of Black Bengal goat (Capra hircus), Mitochondrial DNA Part B, 4, 2121--2122, 2019. Journal DOI
14. Amam Zonaed Siddiki, Abdul Baten, Masum Billah, Mohammad Atique Ul Alam, Kazi Shefaul Mulk Shawrob, Sourav Saha, Muntaha Chowdhury, Atif Hasan Rahman, Michael Stear, Gous Miah, Mahadia Kumkum, Mohammad Sirazul Islam, Mohammad Alamgir Hossain, AKM Mollah, , The genome of the Black Bengal goat (Capra hircus), BMC research notes, 12, 1--3, 2019. Journal DOI
15. Atif Rahman, Lior Pachter, Transcript Abundance Estimation and the Laminar Packing Problem, Algorithms for Computational Biology: 6th International Conference, 203--211, 2019. Conference
16. Ch Md Rakin Haider, Anindya Iqbal, Atif Hasan Rahman, M Sohel Rahman, An ensemble learning based approach for impression fraud detection in mobile advertising, Journal of Network and Computer Applications, 112, 126--141, 2018. Journal
17. A. H. Rahman, Ingilief Hallgrimsdottir, Michael Eisen, Lior Pachter, Association mapping from sequencing reads using k-mers, eLife, 7, 2018. Journal
18. Suri Dipannita Sayeed, M Sohel Rahman, Atif Rahman, On multiple longest common subsequence and common motifs with gaps, WALCOM: Algorithms and Computation: 12th International Conference, WALCOM 2018,, 207--215, 2018. Conference DOI
19. Masud Hasan, Atif Hasan Rahman, Md. Khaledur Rahman, M. Sohel Rahman, Mahfuza Sharmin, Rukhsana Yeasmin, Pancake flipping and sorting permutations, Journal of Discrete Algorithms, 33, 139-149, 2015. Journal
20. A. H. Rahman, Lior Pachter, CGAL: computing genome assembly likelihoods, Genome Biology, 14, 2013. Journal
21. Mahfuza Sharmin, R. Yeasmin, Masud Hasan, A. Rahman, M. Sohel Rahman, Pancake Flipping with Two Spatulas, ISCO 2010 Proceedings: Electronic Notes in Discrete Mathematics, 231-238, 2010. Conference
22. Atif Rahman, Mahmuda Naznin, Masud Hasan, Integer Linear Programming in Designing Universal Arrays with Multiplexed Applications, International Conference on Electronics and Computer Technology, 215-218, 2009. Conference
23. A. H. Rahman, Swakkhar Shatabda, Masud Hasan, An approximation algorithm for sorting by reversals and transpositions, Journal of Discrete Algorithms, 6, 449-457, 2008. Journal

Copyright © Department of Computer Science and Engineering, BUET, Dhaka-1000.